TMARG example
Software accompaniment to
Yufeng Wu,  Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms, in Proceedings of RECOMB 2007, pages 488-502.

TMARG is a program that takes SNP population haplotypes and case/control phenotypes to identify disease associated sites. TMARG takes the approach of inferring genealogical history (in the form of ancestral recombination graph or ARG) and then using the ARGs to map the trait. See the above figure for an example. See my paper for more details.

Note: Files can be downloaded using "Save Link/Target As..." After downloading the softwares, you may need to change file access permissions (e.g. chmod u+x TMARG). Source code is available upon request.

Source code available upon request.