RecBlock is a program for finding the optimal mosaic pattern for
recombinant population SNP sequences. Here is the basic idea. Suppose
for some region of the genome, extant sequences are formed by a small
number of founder sequences. Due to recombination, extant sequences are
mosaic of founder sequences. The above figure shows an example, where
there are 4 founders and 20 population sequences. See my paper for more
Note: Files can be downloaded using "Save
Link/Target As..." After downloading the softwares, you may
need to change file access permissions (e.g. chmod u+x RecBlock).
Source code is available upon request .