RENT is a program for inferring local tree topologies from
recombinant SNP haplotypes. The motivation is that, due to meiotic
recombination, evolutionary history of population sequences is not a
single tree. Instead, the population genealogical history may change
along the genome. RENT is designed to find these changing genealogical
trees (called local trees). See my
paper for more details.
Note: Files can be downloaded using "Save
Link/Target As..." After downloading the softwares, you may
need to change file access permissions (e.g. chmod u+x stells-linux).
Source code is available upon request .
Current version: beta v. 0.1. Source code available upon request.