accompaniment for "A Practical
Method for Exact Computation of Subtree Prune and
Regraft Distance" (link)
accompaniment for my RECOMB 2007 paper.
for our CPM 2007 paper.
accompaniment for our
2006 paper. GRMin computes lower
bound on minimum recombination on genotypes (rather than
haplotypes), while HapBound only allows haplotype input.
Moreover, GRMin also provides
functionality of computing the exact minimum recombination for a
window of data and detecting recombination hotspots. (Available
I wrote HapBound as accompaniment
2005 paper. To the best of knowledge, this is the
currently best program computing lower bound on minimum number
of recombinations for population-scale haplotype data.
I wrote this extension of HapBound as accompaniment to our RECOMB 2006 paper. This
program is the first program computing lower bound allowing gene
conversions in addition to recombinations for haplotype data.