SVseq2



Software accompaniment to

Jin Zhang, Jiayin Wang and Yufeng Wu, "An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data", BMC Bioinformatics 13(Suppl 6):S6, 2012. link

SVseq2: This version uses the BAM files of paired Illumina reads with soft-clip signature as input. It is very fast compared to SVseq. It calls both deletions and insertions.


  • SVseq2_Linux_64, executable compiled under 64 bits Linux.
  • README.TXT

    Also see: SVseq1

    Updated versions:
  • SVseq2_0_1, executable compiled under 64 bits Linux.
  • README2_0_1.TXT

  • SVseq2_2, executable compiled under 64 bits Linux.
  • README2_2.TXT
  • SVseq2_2.tar.gz, source code.